The data for Pres is definitely inconsistent with the other statewide contested race totals. However, those are the official totals certified by the state, so the error is not with the Atlas. The error appears to be with WV.
What do you think happens if the WV secretary of state agrees?
Will Mac Warner instigate a recount of the votes?
Are the ballots still archived anywhere?
I am hoping somehow that the County Clerk office has the correct totals on hand and that the incorrect totals were generated by a transcription error from the state myself I guess.
That does happen sometimes. The SoS relies on the counties to provide results, and the data can get misread going from the county to the state. But it's also possible that they certified a report that had errors. If so, the erroneous report represents the official totals barring a court challenge to change it. At this point I can't imagine a court that would allow such a challenge since the changing the results has no effect on anything material to the state.
In any case, if there is an error they would probably tell anyone studying the results to use a footnote to explain the discrepancy rather than go through a court proceeding.