The model isn't based off national polls, Nate Silver has pointed this out, the model works off state polling, the national polls are only used to apply a trend adjustment so it doesn't matter what the national poll say, the 538 model just operates based off state polls.
For example on September 7 2016, Clinton was projected to win PA by 4% and had a 72% chance of doing so, today Biden is projected to win PA by 4% and has a 71% chance of doing so, if you go state by state, the margins and probability from 2016 are the same in 2020, the only difference is compared to this time in 2016 Trump is doing much worse nationally but not worse in a lot of states.