Where do people get the idea that the poor, poor, poor widdle legislative branch is so oppressed?
It's more difficult for Congress to act coherently than it is for the President or the judiciary. Congress itself is divided in to two separate chambers, and the Senate requires more than a majority to act due to the filibuster.
The President is able to be decisive, because not only is he one person, he can bypass Congress often. Not that that's always bad, since emergencies may require swift action.
As for the courts, SCOTUS can invalidate laws with a simple majority.
I support checks and balances, but maybe it should be easier for Congress to do things.