3. The scientific method is the most reliable way of understanding the natural world.
I am the Lord your God, who brought you out of the land of Egypt, out of the house of slavery. You shall have no other gods before Me.
You're obviously forcing square pegs into round holes.
The scientific method explains nature based on what is found in nature (i.e., Newton). Not the imagination. And that's why the scientific method works. That's how we explained retrograde motion, to name one thing.
Analogies are never exact. The first commandment of the Decalogue calls for holding God in primary reverence while the third commandment of this set calls for placing science in that position.